More information about Gene Probe, Inc and GeneMark can be found on our WWW page
at
http://www.genepro.com
.
Hayes, W. S. and Borodovsky, M. (1998) "How to interpret
an anonymous genome? Learning Markov models for gene identification in parallel
with the sequence annotation," Genome Research
Hayes, W. S., and Borodovsky, M. (1998) "Deriving Ribosomal
Binding Site (RBS) statistical models from unannotated DNA sequences and the use
of the RBS model for N-terminal prediction," accepted for the Proceedings of
Third Pacific Symposium on Biocomputing (PSB '98)
Tomb, J. F. et al. (1997) "The complete genome sequence
of the gastric pathogen Helicobacter pylori," Nature,
388, pp. 539-547
Benian, G., Tinley, T. L., Tang, X. and Borodovsky, M. (1996)
"The C. elegans Gene unc-89, Required for Muscle M-line Assembly,
Encodes a Giant Modular Protein Composed of Ig and Signal Transduction Domains,"
Journal of Cell Biology, 6, pp. 835-848
Kleffe, J., Hermann, K., and Borodovsky, M. (1996) "Statistical
Analysis of GeneMark Performance by Cross-validation," Computers & Chemistry,
20, pp. 123-134
Tatusov, R.L., Mushegian, A.R., Bork, P., Brown, N.P.,Hayes, W.S.,
Borodovsky, M., Rudd, K.E. and Koonin, E.V. (1996) "Metabolism and evolution
of Haemophilus influenzae deduced from a whole-genome comparison with Escherichia
coli. Current Biology, 6, pp. 279-291.
McIninch, J. D., Hayes, W. S., and Borodovsky, M. (1996) "Applications
of GeneMark in Multispecies Environments," in the Proceedings of the Fourth
Internation Conference on Intelligent Systems for Molecular Biology (ISMB96), June
12-15, 1996. AAAI Press, Menlo Park, CA. pp. 165-175
Hirosawa, M., Kaneko, T., Tabata, S., McIninch, J. D., Hayes,
W., Borodovsky, M., Isono, K. (1995) "Prediction of the Coding Regions in a
Contiguous 1MB Sequence of the Genome of Synechocystis sp. Strain PCC6803"
DNA Research, 2, pp. 239-246
Borodovsky, M., McIninch, J. D., Koonin, E. V., Rudd, K. E., Médigue,
C., and Danchin, A. (1995) "Detection of new genes in a bacterial genome using
Markov models for three gene classes," Nucl. Acids Res., 23,
pp. 3554-3562
Borodovsky, M., McIninch, J. D., Hayes, W. (1995) "Gene Identification
in Genomic DNA by GeneMark and Similarity Search Methods." Genome Science and
Technology, 1, p. 71
Borodovsky, M., Koonin, E. V., and Rudd, K. E. (1994) "New
genes in old sequence: a strategy for finding genes in the bacterial genome,"
TIBS, 19, pp. 309-313
Borodovsky, M., Koonin, E. V., and Rudd, K. E. (1994) "Intrinsic
and extrinsic approaches for detecting genes in a bacterial genome, " Nucl.
Acids Res., 22, pp. 4756-4767
Borodovsky, M., and McIninch, J. D. (1993) "Recognition of
genes in DNA sequence with ambiguities, " BioSystems, 30, pp. 161-171